Evaluation of Cancer Bio-markers through Hyphenated Analytical Techniques
Ch. Prudhvi Raju1, G. Raveendra Babu2, M. Sowjanya3, M. Ramayyappa2
1Department
of Pharmaceutical Analysis, Shri Vishnu
College of Pharmacy (Autonomous),
Bhimavaram - 534201, A.P., India.
2Department of Pharmaceutical Analysis, A K R G College of Pharmacy, Nallajerla - 534112, A.P., India.
3Department of Chemistry, Vijaya Teja Degree College, Addanki - 523201, A.P., India.
*Corresponding Author E-mail: upendragudimetla@gmail.com
ABSTRACT:
Background: The accurate and efficient diagnosis at the early stages of cancers is the key feature for effective treatment and productive research for finding out news to types of cancers. It is essentially true for cancers, where there is no effective cure, but only one treatment is available. But most people have a combination of treatments, such as surgery with chemotherapy or radiation therapy or immunotherapy or targeted therapy or hormone therapy.Cancers symptoms of abnormal periods or pelvic pain, changes in bathroom habits, bloating, breast changes, chronic coughing, chronic headache, difficulty swallowing, excessing bruising. Despite the fact of having great need, the current availability of diagnostic tests is unable to diagnose different forms of cancers. Aim: The aim of the review is to explore the application of GC-MS, LC-MS and UP-LC/Q-TOF MS for the evaluation of changes in the biochemical composition of blood serum, urine and saliva. The power of high differentiation method will promote the translation of hyphenated techniques from a laboratory to clinical useful tool. Determination of biochemical information derives from hyphenated techniques from blood, serum, saliva and urine that will yield accurate and selective detection of cancer disorders. They will also provide diagnostic and prognostic indicators and will also play a significant role in the development of personalized medicine. Conclusion: Hyphenated techniques will allow differentiating blood serum, saliva and urine samples of common cancer disorders from normal control patients with sensitivity and specificity.
KEYWORDS: Hyphenate, cancer, biomarker, tool, quadrupole.
INTRODUCTION:
Despite the considerable advances, cancer disorders remain the world’s leading cause of disability and hospitalization. Biomarkers, on the other hands, are multifaceted indicators of pathological disorders.
Potential biomarker discovery from biological fluids has been widely applied to several disorders. Therefore, the study of cancer disorders can benefit by the use of biomarkers because of inherent disease heterogenicity. The application of associated techniques for the identification of biomarker signatures in cancer disorders through hyphenated analysis is less well established. Hence, we aimed to standardize by describing together multiple experimental approaches for sample preparation, instrumentation, acquisition parameters and processing of data related cancer disorders. Using the standardized approach, high quality data for biological fluids analysis will be generating biomarkers either exploration or diagnostic the desired analytical goals of classification for diagnosis, pattern finding and bio-markers investigation in cancer disorders will be accomplished. Furthermore, disorders in this field by biomarker discovery and validation in cancer disorders, future development of this area is being explored. Cancer is one of the leading life-threatening disease all over the world with over 20 types identified and higher than 1500 deaths occurring every day1. The risk factor for cancer mainly include aging, exposure to harmful environmental factors, and adverse lifestyles. Although researches have studied cancer for decades, the early diagnosis and detection of cancer and improvements in the survival time and quality of prognosis remain a major challenge2. Cancer is responsible for an estimated 9.6million deaths in 2018 globally about 1 in 6 deaths due to cancer. Approximately 70% of death from cancer occur in low-and middle-income countries. Around one third of deaths from cancer are due to the 5 leading behavioural and dietary risks, higher body mass index, low fruit and vegetable intake, lack of physical activity, tobacco use, and alcohol use3. Tobacco use is the most important risk factor for cancer and is responsible for approximately 22% of cancer deaths. Cancer causing infections, such as hepatitis and human papilloma virus (HPV) are responsible for up to 25% of cancer cases in low and middle-income countries4. The economic impact of cancer is significant and is increasing. The total annual economic cost of cancer in 2010 was estimated at approximately us 1.16 trillion5.
Classification of Cancers:
From a histological stand point there are hundreds of different cancers, which are grouped into six major categories.
a. Carcinoma:
Carcinoma refers to a malignant neoplasm of epithelial origin or cancer of the internal or external lining of the body. Carcinomas, malignancies of epithelial tissue, account for 80 to 90% of all cancer cases. Carcinomas are divided into two major sub types.
· Adenocarcinomas: which develops in an organ or gland.
· Squamous cell carcinoma which originates in the squamous epithelium.
b. Sarcoma:
Sarcoma refers to cancer that originates in supportive and connective tissues such as bones, tendons, cartilage, muscle and fat.
Generally occurring in young and the most common sarcoma often developed as a painful mass on the bone.
Ex:
Osteosarcoma (bone)
Chondrosarcoma (cartilage)
Leiomyosarcoma (smooth muscle)
Rhabdomyosarcoma (skeletal muscle)
c. Myeloma:
Myeloma is cancer that originates in the plasma cell of bone marrow. The plasma cell produces some of the proteins found in blood.
d. Leukaemia:
Leukaemia is cancer of the bone marrow. This is called as the liquid cancer or blood cancer. The disease is often associated with the over production of immature white blood cells. Leukaemia also effects red blood cells and can cause poor blood clotting and fatigue due to anomia.
Ex:
Amylogenesis or granulocytic leukaemia
Lymphatic, lymphocytic or lymphoblastic leukaemia
Poly leukaemia vera or erythraemia
e. Lymphoma:
Lymphomas developed in the glands or nodes of the lymphatic system, a network of vessels, nodes, and organs that purify body fluids and produce infection fighting with blood cells or lymphocytes.
f. Mixed types:
The types components may be within one category or from different categories.
Ex:
Adenoaquamous carcinoma
Mixed mesodermal tumour
Carcinosarcoma
Teratocarcinoma
Clinical manifestations and investigations:
Most cancers are symptomatic before diagnosis, but the role of lower risk symptoms and of clinical findings potentially available in general practice is un clear. In 164 (62%) of 263 cancer cases, the general practise reported symptoms that helped diagnose cancer. The % rose to78%when clinical findings and test results were added. Lower risk symptoms were reported in 31 (12%) patients and lower risk in 19 (7%) patients. Among patients where clinical sings or testes contributed to diagnosis symptoms were absent in 39% and in 42% respectively showing the sensitivity of complementing reported symptoms with examinations and tests6.
Specific tests for clinical cancers examination include
I. Physical examination,
II. Laboratory tests
Ex:Blood protein test
Tumour marker tests
Circulating tumour cell test
Complete blood count
III. Imaging tests:
Ex:Ct scan, mri, nuclear scan, bone scan, pet scan, ultra-scan, x-ray.
IV. Biopsy
· With a needle
· With endoscopy
Ex: Colonoscopy
Bronchoscopy
· With surgery
· With anaesthesia
Ex: Local anaesthesia
Regional anaesthesia
General anaesthesia
· Punch biopsy
· Shave biopsy
· Skin biopsy
V. Genetic tests
· Testing for mutations
· Susceptibility gen testing
1. Biomarkers need:
Biological markers are bio-chemical, cellular or molecular alterations that can be measured in biological media. Biomarkers include technologies and tools that help in the understanding of prediction cause diagnosis, regression, progression and outcome of the treatment of disseise. Figure -1. Shows, classified biomarkers in four categories on the sequence of events on exposure to disease such as predictive, diagnostic, prognostic and monitoring of the pharmacodynamics response of drugs after the delivery of drugs. Biomarkers also help to determine treatment response on the proposed target and whether the drug has altered the cause of the disease7.
Figure-1. Classification of biomarkers
2. Methods of collecting samples:
Sample collection and storage9:
Traditionally, plasma, serum and urine where mainly the samples employed for cancer studies because they reflect an individual’s global metabolic status and the collection process or minimally invasive. However, these complex samples are easily diluted by small metabolic changes from a specific part of the body. All of the samples collection methods are summarized in Table-3.
Table. 1: Biomarkers in cancer disease8-17
|
Sample |
Collection |
storage |
preparations |
|
Blood/plasma/serum |
Collected in heparin tubes Centrifuged |
80oC |
Centrifuged after thawing at 4oc Add duterium oxide (to lock) Add ACN (for protien precipitation) |
|
Urine |
Collected in a sterile cap Aliquots of approximately 1mL were transferred into sterial cryovials |
80oC |
Centrifuged after thawing at 4oc Remve cells and other precipitated materials Add buffer to urine |
|
BALF |
Divided into 1mL aliquots in eppendorf tubes |
80oC |
Add duteruim oxide to BALF Add methanol/chloroform extraction |
|
CSF |
Obtain during surgery Snap -frozen in liquid nitrogen |
80oC |
Add duteriumoxide to CSF |
|
EBC |
The device used for smapling directly collects Concenses the EBC in disposable polyethylene bags at -20 C |
80oC |
Add duteriumoxide to EBC |
|
Tissues |
Retrived from surgical specimens Snap-frogen in liquid nitrogen |
80oC |
Add a few drops of duterium oxide Add saline and cooled tissue Add methanol/ chloroform extraction to tissue |
|
Sweat |
Use the sweat inducer to collect sweat The macroduct collecter converts the skin to collect sweat Trasfer the sweat to micro tubes |
80oC |
Add 0.1% formic acid to sweat Add duterium oxide to sweat |
Table-2. Biomarkers identified with hyphenated techniques in cancer diseases 18-27
|
Cancer type |
Panel of protein markers |
Technique |
|
Lung |
carcinoembryonic antigen, retinol binding protein alpha 1-antitrypsin squamous cell carcinoma antigen |
2D-DIGE and MALDI-TOF |
|
Ovarian |
Corticosteroid-binding globulin (CBG) serum amyloid p component (SAP) complement factor B (CFAB) |
lectin array and quantitative LC-MS/MS |
|
Head and neck |
14-3-3 protein zeta/delta (YWHAZ), stratifin S100-A7 |
Multidimensional LC-MS/MS |
|
Pancreatic Cancer |
α-1-antichymotrypsin (AACT) thrombospondin-1 (THBS1) haptoglobin (HPT) |
Label-free and TMT strategies LC-MS/MS |
Table-3. Samples collection methods28-35
|
Biomarker |
Modality |
Decision-making role |
Notes |
|
ACR BI-RADS breast morphology |
Mammography |
Diagnostic in breast cancer |
Used worldwide |
|
Clinical TNM stage |
XR, CT, MRI, PET, SPECT, US, Endoscopy |
Prognostic in nearly all cancers |
• Used worldwide • Guides management of nearly every patient with a solid tumour • Extensively validated and qualified |
|
Bone scan index |
SPECT |
Prognostic in prostate cancer |
• Continuous variable data converted to ordered categorical IB • Calculation uses software requiring regulatory approval |
|
Left ventricular ejection fraction |
Scintigraphy, US |
• Safety biomarker • Guides therapy |
• Guides management of a substantial number of patients (for example, trastuzumab) • Decrease in LVEF of >10% confirmed with repeated imaging |
|
T-score |
DXA |
• Safety biomarker • Guides prescription of bisphosphonates to patients with breast cancer and bone loss induced by therapy |
• Number of standard deviations below mean bone density • Calculation uses software requiring regulatory approval |
|
Uptake of 111 In- pentetreotide, 68Ga-dotatate octreotide conjugates |
SPECT, PET |
• Identification of primary or residual neuroendocrine lesions • Prescriptionof177Lu-dotatate- octreotide ablationtherapy |
IBisSUVmax (targetlesion)> SUVmax (back ground liver or bone marrow) |
|
99mTc-tilmanocept uptake above cut-off |
SPECT |
Intraoperative detection of sentinel lymph nodes |
• Biomarker cut-of fisback ground radioactivity counts > 3standard deviations from the mean background count level, with background counts determined from tissue at least 200mm distal to the injection site • Approved for use in patients with breast cancer or melanoma |
|
Split renal function measured by 99mTc-mertiatide (MAG3) |
SPECT |
Determination of split renal function prior to nephrectomy, which guides surgical decision-making |
NA |
|
MARIBS category |
MRI |
Determination of risk of breast cancer in patients harbouring genetic risk factors such as mutations in BRCA1 or BRCA2 |
Approved by NICE for clinical use in UK |
|
Objective response |
CT, MRI, PET |
Guides decision to continue, discontinue, or switch therapy |
• Used worldwide to guide management of nearly every patient with a solid tumour • Extensively validated and qualified |
|
Circumferential resection margin status |
MRI |
Determination of whether circumferential resection margin is clear in rectal cancer with pre-operative high-resolution MRI scan |
Prognostic value in rectal cancer; now approved for clinical use |
|
Objective response |
CT, MRI, PET |
• End point in phase II trials • Contribution to PFS determination |
PFS end point is heavily based on objective response as well as serology and clinical markers |
|
Splenic volume |
CT, MRI |
Assessments of responsein patients with myelofibrosis |
Used in FDA approval of ruxolitinib |
|
Biomarker |
Modality |
Decision-making role |
Notes |
|
ACR BI-RADS breast morphology |
Mammography |
Diagnostic in breast cancer |
Used worldwide |
|
Clinical TNM stage |
XR, CT, MRI, PET, SPECT, US, Endoscopy |
Prognostic in nearly all cancers |
• Used worldwide • Guides management of nearly every patient with a solid tumour • Extensively validated and qualified |
|
Bone scan index |
SPECT |
Prognostic in prostate cancer |
• Continuous variable data converted to ordered categorical IB • Calculation uses software requiring regulatory approval
|
|
Left ventricular ejection fraction |
Scintigraphy, US |
• Safety biomarker • Guides therapy |
• Guides management of a substantial number of patients (for example, trastuzumab) • Decrease in LVEF of >10% confirmed with repeated imaging |
|
T-score |
DXA |
• Safety biomarker • Guides prescription of bisphosphonates to patients with breast cancer and bone loss induced by therapy |
• Number of standard deviations below mean bone density • Calculation uses software requiring regulatory approval |
|
Uptake of 111In- pentetreotide, 68Ga-dotatate octreotide conjugates |
SPECT, PET |
• Identification of primary or residual neuroendocrine lesions • Prescription of177Lu-dotatate- octreotide ablation therapy |
IBisSUVmax(targetlesion)>SUVmax (background liver or bone marrow) |
|
99mTc-tilmanocept uptake above cut-off |
SPECT |
Intraoperative detection of sentinel lymph nodes |
• Biomarker cut-off is background radioactivity counts>3 standard deviations from the mean background count level, with background counts determined from tissue at least 200mm distal to the injection site • Approved for use in patients with breast cancer or melanoma |
|
Split renal function measured by 99mTc-mertiatide (MAG3) |
SPECT |
Determination of split renal function prior to nephrectomy, which guides surgical decision-making |
NA |
|
MARIBS category |
MRI |
Determination of risk of breast cancer in patients harbouring genetic risk factors such as mutations in BRCA1 or BRCA2 |
Approved by NICE for clinical use in UK |
|
Objective response |
CT, MRI, PET |
Guides decision to continue, discontinue, or switch therapy |
• Used worldwide to guide management of nearly every patient with a solid tumour • Extensively validated and qualified |
|
Circumferential resection margin status |
MRI |
Determination of whether circumferential resection margin is clear in rectal cancer with pre-operative high-resolution MRI scan |
Prognostic value in rectal cancer; now approved for clinical use |
|
Objective response |
CT, MRI, PET |
• End point in phase II trials • Contribution to PFS determination |
PFS end point is heavily based on objective response as well as serology and clinical markers |
|
Splenic volume |
CT, MRI |
Assessments of response in patients with myelofibrosis |
Used in FDA approval of ruxolitinib |
b. Sample preparation43-47:
Preparation of the sample for proteomic and metabolic analysis prior to analysis an introduce errors that will affect the final results. The research for bio markers in biological samples involves in different steps depending on the sample type and if it is analysed for metabolites or proteins. Extraction of metabolites from blood, urine or tissue for a global study is not an easy task. It involves extraction of the proteins followed by enzymatic dilution, fractionation and then analysed by HPLC by MS /MS. Analysis of blood is more complicated than urine. As urine contains fewer proteins and high abundant protein must be depleted from blood prior to HPLC byMS/MS analysis. Approximately 99% of the protein content of blood is made up of only about 20 proteins. Tissues are homogenised firstand then metabolites and proteins are extracted and analysed.
c. Methods of analysis:
Choosing the optimal analysis method is critical in proteomics and metabolomics. Three different approaches for the global analysis of serum proteins have been used. Global serum proteome analysis using two dimensional (2d) and three dimensional (3d) HPLC-MS analysis of low molecular weight proteins/peptides and investigation of proteins and peptides that are bound to high – abounds serum proteins. Unfortunately, studied have shown that the analysis of the plasma proteome by groups choosing different methods resulted not only in different number of protein identification but poor overlap between the results. Common methods for analysing metabolism include GC-MS, HPLC/MS or CE/MS all the metabolites were detected using the three methods. These results prove that the selected method of analysis is an important parameter.
d. Analytical method of validation of cancer biomarkers:
The key variable assay elements of cancer biomarker method validation are more complicated that for the typical bioanalytic assay that follows good laboratories practices (GLP) guidelines (11). Table -2 compare these two-validation parading and high lights some of the validation challenges encountered with biomarker assays. Cancer biomarker assay development and method validation is a complex process that depends on several variables from the choice of the matrix to maintaining sample integrity to assay standardization and accuracy.
Table-4. Comparison of bioanalytic assay and biomarker assay validation variables47-60
|
Variable |
Bioanalytic (GLP)assay |
Biomarker assay |
|
Assaymethodcategory |
Most are definitivequantitative |
Most are relative or quasi-quantitative |
|
Regulatoryrequirement |
GLP |
No specific guidelines |
|
Natureofanalyte |
Exogenous |
Endogenous |
|
Stability |
Drug standards, QCs, sampleanalyte |
Stability of standards and matrix |
|
stability often good |
|
analytes often poor |
|
Stabilitytesting |
Freeze/thaw,benchtop,longtermmeasured |
Freeze/thaw, bench top, storage stability |
|
by spiking biological matrix with drug |
|
with study samples |
|
Standards/calibrators |
Standardspreparedinstudymatrix;certified |
Standards/calibrators made in matrix |
|
standard readily available |
|
different than study samples; certified |
|
|
|
standards not available |
|
Calibrationmodel |
Mostlylinear |
Choose appropriate calibration model fitting |
|
|
|
method and tools |
|
QCs |
Certified standard and blankpatient |
Certified standard or blank matrix usually not |
|
sample matrix available |
|
available; substitute with surrogate matrices |
|
VS andQCmeasurements |
Made in study matrix. 4-5 VSlevels |
Made in study matrix. At least 5 VS levels and |
|
and 3 QC levels |
|
3 QC levels. If study matrix is limited may |
|
|
|
use surrogate matrix |
|
Assayacceptancecriteria |
4-6-15 rule (for smallmolecules) |
4-6-X rule or establish confidence interval |
|
Precision/accuracy |
Robust technology with acceptancecriteria |
Variable; no acceptance criteria |
|
Specificity/selectivity |
Drugs not present in samplematrix; |
Specificity issues: biomarkers present in |
|
samples are subject to cleanup and |
|
sample matrix; samples not subject to |
|
analyte recovery |
|
cleanup; assess matrix effects and minimize; |
|
|
|
investigate sources of interference |
|
Sensitivity |
LLOQ defined by acceptancecriteria |
Limited sensitivity and dynamic range; |
|
|
|
LLOQ and LOD defined based on working criteria |
|
Abbreviation: LOD, limit of detection. |
|
|
CONCLUSION:
The ultimate goal of this review was the development of biomarkers, which allowed the identification of cancer diseases. The several advantages of hyphenated techniques of biofluids for disease detection includes, possibility of two profile chromatographic disease related changes of fluid composition and the analysis methods that are suitable for automation.Yet, several challenges remain to the compared, which includes the integration of these techniques into clinical practices. Moreover, close collaboration of clinicians with hyphenated technicians will turn the use of hyphenated to biofluid classification into a valuable diagnostic and screening tool in clinical practice. However, large multi cantered randomized controlled studies with the gold standard of sample handling protocols and current diagnostic method will help in the validation of cancer biomarker.
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Received on 13.03.2021 Modified on 26.04.2021
Accepted on 29.05.2021 ©Asian Pharma Press All Right Reserved
Asian J. Pharm. Ana. 2021; 11(3):235-242.
DOI: 10.52711/2231-5675.2021.00041